The Sage Manuals

Sage’s manuals are written in ReST (reStructuredText), and generated with the software Sphinx:

Name	Files
Tutorial	SAGE_ROOT/src/doc/en/tutorial
Developer’s guide	SAGE_ROOT/src/doc/en/developer
Constructions	SAGE_ROOT/src/doc/en/constructions
Installation guide	SAGE_ROOT/src/doc/en/installation
Reference manual	SAGE_ROOT/src/doc/en/reference (most of it is generated from the source code)

• Additionally, more specialized manuals can be found under SAGE_ROOT/src/doc/en.

• Some documents have been translated into other languages. In order to access them, change en/ into fr/,es/, de/… See Document Names.

Editing the documentation

After modifying some files in the Sage tutorial (SAGE_ROOT/src/doc/en/tutorial/), you will want to visualize the result. In order to build a html version of this document, type:

sage --docbuild tutorial html

You can now open SAGE_ROOT/local/share/doc/sage/html/en/tutorial/index.html in your web browser.

• Do you want to add a new file to the documentation? Click here.

• For more detailed information on the --docbuild command, see Building the Manuals.

Run doctests: All files must pass tests. After modifying a document (e.g. tutorial), you can run tests with the following command (see Running Automated Doctests):

sage -tp SAGE_ROOT/src/doc/en/tutorial/

Reference manual: as this manual is mostly generated from Sage’s source code, you will need to build Sage in order to see the changes you made to some function’s documentation. Type:

sage -b && sage --docbuild reference html

Hyperlinks

The documentation can contain links toward modules, classes, or methods, e.g.:

:mod:`link to a module <sage.module_name>`
:mod:`sage.module_name` (here the link's text is the module's name)

For links toward classes, methods, or function, replace :mod: by :class:, :meth: or func: respectively. See Sphinx’ documentation.

Short links: the link :func:`~sage.mod1.mod2.mod3.func1` is equivalent to :func:`func1 <sage.mod1.mod2.mod3.func1>`: the function’s name will be used as the link name, instead of its full path.

Local names: links between methods of the same class do not need to be absolute. If you are documenting method_one, you can write :meth:`method_two`.

Global namespace: if an object (e.g. integral) is automatically imported by Sage, you can link toward it without specifying its full path:

:func:`A link toward the integral function <integral>`

Sage-specific roles: Sage defines several specific roles:

Trac server	:trac:`17596`	trac ticket #17596
Wikipedia	:wikipedia:`Sage_(mathematics_software)`	Wikipedia article Sage_(mathematics_software)
arXiv	:arxiv:`1202.1506`	arXiv 1202.1506
On-Line Encyclopedia of Integer Sequences	:oeis:`A000081`	OEIS sequence A000081
Digital Object Identifier	:doi:`10.2752/175303708X390473`	doi:10.2752/175303708X390473
MathSciNet	:mathscinet:`MR0100971`	MathSciNet MR0100971

http links: copy/pasting a http link in the documentation works. If you want a specific link name, use `link name <http://www.example.com>`_

Anonymous hyperlinks: Using a single underscore creates an explicit target name "link name" which needs to be unique in the current page. Using the same target name twice in the same page creates an error while building the documentation saying WARNING: Duplicate explicit target name: .... To avoid this issue, one can change the target names to be all different or another option is to use anonymous hyperlinks with two underscores, as in see `this page <http://www.example.com>`__ or `this page <http://www.example2.com>`__.

Broken links: Sphinx can report broken links. See Building the Manuals.

Adding a New File

If you added a new file to Sage (e.g. sage/matroids/my_algorithm.py) and you want its content to appear in the reference manual, you have to add its name to the file SAGE_ROOT/src/doc/en/reference/matroids/index.rst. Replace ‘matroids’ with whatever fits your case.

The combinat/ folder: if your new file belongs to a subdirectory of combinat/ the procedure is different:

• Add your file to the index stored in the __init__.py file located in the directory that contains your file.

• Add your file to the index contained in SAGE_ROOT/src/doc/en/reference/combinat/module_list.rst.

Building the Manuals

(Do you want to edit the documentation? Click here)

All of the Sage manuals are built using the sage --docbuild script. The content of the sage --docbuild script is defined in SAGE_ROOT/src/sage_docbuild/__init__.py. It is a thin wrapper around the sphinx-build script which does all of the real work. It is designed to be a replacement for the default Makefiles generated by the sphinx-quickstart script. The general form of the command is:

sage --docbuild <document-name> <format>

For example:

sage --docbuild reference html

Two help commands which give plenty of documentation for the sage --docbuild script:

sage --docbuild -h # short help message
sage --docbuild -H # a more comprehensive one

Output formats: All output formats supported by Sphinx (e.g. pdf) can be used in Sage. See http://sphinx.pocoo.org/builders.html.

Broken links: in order to build the documentation while reporting the broken links that it contains, use the --warn-links flag. Note that Sphinx will not rebuild a document that has not been updated, and thus not report its broken links:

sage --docbuild --warn-links reference html

Document Names

The <document-name> has the form:

lang/name

where lang is a two-letter language code, and name is the descriptive name of the document. If the language is not specified, then it defaults to English (en). The following two commands do the exact same thing:

sage --docbuild tutorial html
sage --docbuild en/tutorial html

To specify the French version of the tutorial, you would simply run:

sage --docbuild fr/tutorial html

Syntax Highlighting Cython Code

If you want to write Cython code in a ReST file, precede the code block by .. CODE-BLOCK:: cython instead of the usual ::. Enable syntax-highlighting in a whole file with .. HIGHLIGHT:: cython. Example:

cdef extern from "descrobject.h":
    ctypedef struct PyMethodDef:
        void *ml_meth
    ctypedef struct PyMethodDescrObject:
        PyMethodDef *d_method
    void* PyCFunction_GET_FUNCTION(object)
    bint PyCFunction_Check(object)